{Open group dChip
  Treat this array type as 'Expression'
  Converting CDF file 'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\MOE430A.CDF' into dChip binary format for faster access...
    Line 930000
    Saving E:\Lab Records\Students\Speicher_Stephen\TRAMP data\MOE430A.CDF.bin ...

  Search and extract 'CEL' probe data files of chip type 'MOE430A' in 'E:\Lab Records\Students\Speicher_Stephen\TRAMP data'...

  Found 1: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 2: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_TRAMP_treated.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_TRAMP_treated.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 3: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_12 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 4: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 5: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_TRAMP_treated.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_TRAMP_treated.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 6: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_17 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 7: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 8: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP_treat_TumorFree.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP_treat_TumorFree.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 9: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP_treat_Tumors.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_TRAMP_treat_Tumors.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 10: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\1_24 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: A
  Found 11: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 12: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_TRAMP_treated.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_TRAMP_treated.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 13: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_12 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 14: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 15: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_TRAMP_treat.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_TRAMP_treat.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 16: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_17 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: A
  Found 17: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 18: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP_treat_TumorFree.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP_treat_TumorFree.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 19: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP_treat_Tumors.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_TRAMP_treat_Tumors.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 20: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\2_24 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 21: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 22: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_TRAMP_treat.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_TRAMP_treat.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 23: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_12 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 24: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 25: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_TRAMP_treat.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_TRAMP_treat.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 26: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_17 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 27: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 28: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP_treat_TumorFree.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP_treat_TumorFree.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 29: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP_treat_Tumors.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_TRAMP_treat_Tumors.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 30: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_WILD.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\3_24 wk_WILD.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: A
  Found 31: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\4-24 wk_Tramp-treat_TumorFree.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\4-24 wk_Tramp-treat_TumorFree.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P
  Found 32: E:\Lab Records\Students\Speicher_Stephen\TRAMP data\4-24 wk_Tramp-treat_Tumors.CEL
    Reading CEL file...
      Line 500000
    'E:\Lab Records\Students\Speicher_Stephen\TRAMP data\4-24 wk_Tramp-treat_Tumors.CEL' is not an Affymetrix analysis result file, ignored
      No matching TXT file; calculating Presence calls...
        Gene 22500: P

  Calculating background...

  Writing array summary file 'E:\Lab Records\Students\Speicher_Stephen\dChip_array_summary.xls'
    Group "dChip" contains 32 arrays

  Treat all the 32 arrays as 32 samples and 1 sample groups

Finished in 00 hours 01 minutes 59 seconds}
